PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G088700.1.p
Common NameGLYMA_11G088700, LOC100782414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 791aa    MW: 90291.3 Da    PI: 6.8384
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G088700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.11.2e-3184175291
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          fYn+YA++vGFs+r+s s++s+r+g+i++r fvC keg+r e++k+  + + +r+raetr+gCka+l+vk +++g+w+v+++ +eHnHel
  Glyma.11G088700.1.p  84 FYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEREKHlvDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFLKEHNHEL 173
                          9********************************************988888999************************************ PP

                 FAR1  90 ap 91 
                          +p
  Glyma.11G088700.1.p 174 VP 175
                          86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2984175IPR004330FAR1 DNA binding domain
PfamPF105514.4E-31298390IPR018289MULE transposase domain
PROSITE profilePS5096610.806578614IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-9586613IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7589616IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MEFEPLSLSD EVIEFDMIGL GDDAAIDTEH PVEDDEDLVN IDNSPATAFT VLAAGLGPHI  60
AGGDTNLEPC QGMEFESEEA AKAFYNSYAR RVGFSTRVSM SRRSRRDGSI IQRSFVCAKE  120
GFRVEREKHL VDGRVKRPRA ETRVGCKAML VVKIQDSGRW VVSSFLKEHN HELVPPDKVH  180
CLRSHRHVSG PAKSLIDTLQ GAGIGPSGIM SALIKEYGAI SNIGFTERDC RNYMRSSRQR  240
TLGGDTQILL DYLKSKQAEN PSFFYAVQLQ GDEDHCMSNI FWVDSKARTN YTYFGDTVTF  300
DTAYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFKTWLE AMTGQPPVSI  360
TTDHDRVIRA AINNVFPGTR HRFCKWHVFK ECQEMLSHVL SEHLNFEADL HKCVNLTESI  420
EEFESCWSSL IDRYDLKEHE WLKAIYGDRR QWVPVYLRDT FFAEMSITQR SDSINSYFDG  480
YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTTPVL KTPSPLEKQA AEVYTRRLFI  540
KFQEELVETL TFLANKVDEK EIITVYRVAK YGEMHRAYFV RFNSFEMKAT CTCQMFEFSG  600
LVCRHILTVF RVINLLTLPS HYILKRWSRI AKSGAILDER TTNLSTRAQE SLTIRYNNLR  660
HKALKYADEG INSPKVYDVA LSALLEAASK VALATKNGGR QTILNGTCEE DLHQSNEATT  720
SCSDSPIGSQ QSSYKDDQDR TIEKLTRQLD RARRKCEVYR SNLLSVLKDI EEQKLQLSVK  780
VQNIKLEMKD *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538916.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLI1LIE20.0I1LIE2_SOYBN; Uncharacterized protein
STRINGGLYMA11G09400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5